Skip to main content
Ctrl+K
AFQ 3.1 documentation - Home AFQ 3.1 documentation - Home
  • User Guide
  • Tutorials: Getting started
  • How to examples
  • Developing pyAFQ
  • Bibliography
  • API Reference
  • GitHub
  • User Guide
  • Tutorials: Getting started
  • How to examples
  • Developing pyAFQ
  • Bibliography
  • API Reference
  • GitHub
Ctrl+K

Section Navigation

  • Getting started with pyAFQ
    • Tutorials: Getting started
      • Getting started with pyAFQ - GroupAFQ
      • Getting started with pyAFQ - ParticipantAFQ
      • Re-running pyAFQ
      • Exporting pyAFQ Results
      • Visualizing AFQ derivatives
      • How pyAFQ uses BIDS
      • Plotting Default Regions of Interest (ROIs) to Understand the Tracts
  • How To
    • How to install pyAFQ
    • How to get help using pyAFQ
    • How to cite our work
    • Organizing your data
    • Re-running pyAFQ
    • How to add custom tissue properties from another pipeline
    • Tractography from other pipelines
    • The pyAFQ docker image
    • The pyAFQ singularity image
    • The pyAFQ Image API
    • Tractography Parameters
    • Segmentation Parameters
    • Cleaning Parameters
    • How to examples
      • How to add new bundles into pyAFQ (Acoustic Radiations Example)
      • How to add new bundles into pyAFQ (SLF 1/2/3 Example)
      • Callosal bundles using AFQ API
      • How to use Free water DTI
      • BabyAFQ : tractometry for infant dMRI data
      • Delineating cerebellar peduncles
      • Using cloudknot to run pyAFQ on AWS batch:
      • AFQ with HCP data
      • How to add new bundles into pyAFQ(Optic Radiations Example)
      • How to track the Optic Tract and Posterior Optic Nerve in pyAFQ
      • Understanding the different stages of tractometry with videos
      • Running pyAFQ using the GPU for tractography
      • Running pyAFQ 2.x defaults in pyAFQ 3.x
      • Using RecoBundles for bundle recognition
      • Using Subject Space ROIs from Freesurfer
      • How to segment out only some bundles
  • Explanations
    • Bundle Orientation
    • Modeling White Matter
    • Profiling
    • Bundle Recognition
    • Tractography
    • What’s new in PyAFQ 3.0
  • Reference Documentation
    • API Reference
      • AFQ
        • AFQ.api
        • AFQ.data
        • AFQ.definitions
        • AFQ.models
        • AFQ.nn
        • AFQ.recognition
        • AFQ.registration
        • AFQ.tasks
        • AFQ.tractography
        • AFQ.utils
        • AFQ.viz
    • Defining Custom Bundle Dictionaries
    • Major Fiber Tracts
    • Tissue Properties in pyAFQ
    • The pyAFQ API methods
    • The pyAFQ API optional arguments
    • Visualization Backends
    • The pyAFQ Mapping API
    • The pyAFQ configuration file
  • User Guide
  • Reference Documentation
  • API Reference
  • AFQ

AFQ#

Submodules#

  • AFQ.api
  • AFQ.data
  • AFQ.definitions
  • AFQ.models
  • AFQ.nn
  • AFQ.recognition
  • AFQ.registration
  • AFQ.tasks
  • AFQ.tractography
  • AFQ.utils
  • AFQ.viz

Attributes#

_ga_id

Package Contents#

AFQ._ga_id = 'UA-156363454-3'[source]#

previous

API Reference

next

AFQ.api
On this page
  • Submodules
  • Attributes
  • Package Contents
    • _ga_id
Edit on GitHub
Show Source

© Copyright 2018--, The pyAFQ Contributors.

Created using Sphinx 9.1.0.

Please Cite the following papers:
Kruper et al. (2025)
Kruper et al. (2021)