Reference Documentation

• API Reference
  • AFQ
• Defining Custom Bundle Dictionaries
  • Filtering by Other Bundles
  • Mixed space ROIs
  • Filtering Order
  • Examples
• Major Fiber Tracts
• Tissue Properties in pyAFQ
  • DTI Model Parameters
  • Free-water DTI (FWDTI) Parameters
  • DKI Model Parameters
  • Mean Signal DKI (MSDKI) Parameters
  • CSD Model Parameters
  • GQ (Generalized Q-Sampling) Parameters
  • OPDT (Orientation Probability Density Transform) Parameters
  • CSA (Constant Solid Angle) Parameters
  • RUMBA Model Parameters
• The pyAFQ API methods
• The pyAFQ API optional arguments
  • STRUCTURAL
  • DATA
  • TISSUE
  • MAPPING
  • SEGMENTATION
  • TRACTOGRAPHY
  • VIZ
• Visualization Backends
• Fury Dockerfile for Cloudknot
• The pyAFQ Mapping API
• The pyAFQ configuration file