AFQ.recognition.utils

Module Contents

Classes

SlsBeingRecognized

Functions

flip_sls(select_sl, idx_to_flip[, in_place])	Helper function to flip streamlines
cut_sls_by_dist(select_sl, roi_dists, roi_idxs[, in_place])	Helper function to cut streamlines according to which points
read_tg(tg[, nb_streamlines])
orient_by_streamline(sls, template_sl)
move_streamlines(tg, to, mapping, img[, ...])	Move streamlines to or from template space.
resample_tg(tg, n_points)

Attributes

logger

AFQ.recognition.utils.logger

AFQ.recognition.utils.flip_sls(select_sl, idx_to_flip, in_place=False)

Helper function to flip streamlines

AFQ.recognition.utils.cut_sls_by_dist(select_sl, roi_dists, roi_idxs, in_place=False)

Helper function to cut streamlines according to which points are closest to certain rois.

Parameters

select_sl, streamlines to cut

roi_dists, distances from a given streamline to a given inclusion roi

roi_idxs, two indices into the list of inclusion rois to use for the cut

in_place, whether to modify select_sl

AFQ.recognition.utils.read_tg(tg, nb_streamlines=None)

AFQ.recognition.utils.orient_by_streamline(sls, template_sl)

AFQ.recognition.utils.move_streamlines(tg, to, mapping, img, save_intermediates=None)

Move streamlines to or from template space.

tostr

Either “template” or “subject”.

mappingConformedMapping

Mapping to use to move streamlines.

imgNifti1Image

Space to move streamlines to.

AFQ.recognition.utils.resample_tg(tg, n_points)

class AFQ.recognition.utils.SlsBeingRecognized(sls, logger, save_intermediates, b_name, ref, n_roi_dists)

initiate_selection(clean_name)

select(idx, clean_name, cut=False)

get_selected_sls(cut=False, flip=False)

reorient(idx)

__bool__()

__len__()