AFQ.utils.bin

Module Contents

Functions

model_input_parser(usage)
model_predict_input_parser(usage)
toml_to_val(t)
val_to_toml(v)
dict_to_toml(dictionary)
dict_to_json(dictionary)
func_dict_to_arg_dict([func_dict, logger])
parse_config_run_afq(toml_file, default_arg_dict[, ...])
generate_config(toml_file, default_arg_dict[, ...])
generate_json(json_folder[, overwrite, logger])

Attributes

qsi_prep_ignore_params

AFQ.utils.bin.model_input_parser(usage)

AFQ.utils.bin.model_predict_input_parser(usage)

AFQ.utils.bin.toml_to_val(t)

AFQ.utils.bin.val_to_toml(v)

AFQ.utils.bin.dict_to_toml(dictionary)

AFQ.utils.bin.qsi_prep_ignore_params = ['bids_path', 'bids_filters', 'preproc_pipeline', 'participant_labels', 'output_dir']

AFQ.utils.bin.dict_to_json(dictionary)

AFQ.utils.bin.func_dict_to_arg_dict(func_dict=None, logger=None)

AFQ.utils.bin.parse_config_run_afq(toml_file, default_arg_dict, to_call='export_all', overwrite=False, logger=None, verbose=False, dry_run=False, special_args={'SEGMENTATION_PARAMS': 'segmentation_params', 'TRACTOGRAPHY_PARAMS': 'tracking_params'})

AFQ.utils.bin.generate_config(toml_file, default_arg_dict, overwrite=False, logger=None)

AFQ.utils.bin.generate_json(json_folder, overwrite=False, logger=None)