How To

This section of the documentation provides guides on various aspects of the software.

• How to install pyAFQ
  • How to install the release version
  • How to install the development version
  • How to install using Docker
  • How to build an Apptainer (Singularity) image
• How to use pyAFQ
  • Organizing your data
  • The pyAFQ API optional arguments
  • How to add custom tissue properties from another pipeline
  • Tractography from other pipelines
  • Matlab AFQ to Python AFQ conversion
  • The pyAFQ docker image
  • The pyAFQ API methods
  • The pyAFQ Image API
• How to contribute to pyAFQ
• How to develop pyAFQ
  • Adding Tasks to the pyAFQ Workflow
  • Task Decorators
  • Checklist for Adding Tasks to the pyAFQ Workflow
  • Adding Definitions
  • How to create a release
• How to get help using pyAFQ
• How to cite our work
• How to examples