Create a merged AFQ/phenotype dataframe

Usage

read_afq_files(
  nodes_csv,
  pheno_csv = NULL,
  index = "subjectID",
  index_nodes = index,
  index_pheno = index,
  dwi_metrics = NULL,
  factor_cols = NULL,
  pheno_cols = NULL,
  ...
)

Arguments

nodes_csv: path to a nodes file
pheno_csv: path to a phenotypic file, leave NULL to return an "unsupervised" AFQ dataset
index: specification of the column used for merging
index_nodes: specification of the column used for merging
index_pheno: specification of the column used for merging
dwi_metrics: which diffusion metrics should be retained
factor_cols: which columns should be treated as factors
pheno_cols: which columns to include from pheno file
...: arguments to be passed to read.csv

Examples

if (FALSE) { # \dontrun{
  df_afq <- read_afq_files(nodes_csv = "a/path/to/nodes.csv",
                           pheno_csv = "a/path/to/pheno.csv")
} # }