:py:mod:`AFQ.viz.plot`
======================

.. py:module:: AFQ.viz.plot


Module Contents
---------------


Functions
~~~~~~~~~

.. autoapisummary::

   AFQ.viz.plot.visualize_tract_profiles
   AFQ.viz.plot.visualize_gif_inline



.. py:function:: visualize_tract_profiles(tract_profiles, scalar='dti_fa', ylim=None, n_boot=1000, file_name=None, positions=vut.POSITIONS)

   
   Visualize all tract profiles for a scalar in one plot


   :Parameters:

       **tract_profiles** : string
           Path to CSV containing tract_profiles.

       **scalar** : string, optional
           Scalar to use in plots. Default: "dti_fa".

       **ylim** : list of 2 floats, optional
           Minimum and maximum value used for y-axis bounds.
           If None, ylim is not set.
           Default: None

       **n_boot** : int, optional
           Number of bootstrap resamples for seaborn to use
           to estimate the ci.
           Default: 1000

       **file_name** : string, optional
           File name to save figure to if not None. Default: None

       **positions** : dictionary, optional
           Dictionary that maps bundle names to position in plot.
           Default: vut.POSITIONS

   :Returns:

       Matplotlib figure and axes.
           ..













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.. py:function:: visualize_gif_inline(fname, use_s3fs=False)

   
   Display a gif inline, possible from s3fs 
















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